run velvetg on tp2
run velveth on tp2
the files Ian gave me had some data that I needed to ditch,
using barcode info in FA headers I made the call in this script and split output into various bc files
run a gfClient against the each strain for each sample
run a port perl strain, for looking up the contigs
shuffle is term given to joining the two ends of a paired end read. not the best name really.
time point 2. This is the "normal" ie low coverage data.