converted 2 to 2G
converted 2 to 2G
converted 2 to 2G
converted 2 to 2G
chage protocol location for test run
Merge pull request #67 from PatrickDeelen/master

Updates to diverse pipelines
added header.ftl
added echo stage
added echo stage
added echo in outsexist
added header.ftl
Updates on haloplex pipeline
fix: shepitThreads
fix: shapeitThreads
Removed default filtering of vcfToTable
fixed protocols paths
change protocol paths in workflows
Merge pull request #68 from kantale/master

These are changes in orde to make all three steps of imputation run in PBS with test dataset (hapmap3)
fixed alloutputsexists
fixed shapeit command