util: BinarySerializer serializes and deserializes a file format version tag with every cubbie. This allows keeping old deserialization code around and working even as we improve things.
Add prior beta, while exporting phis after training lda
Merge remote-tracking branch 'upstream/master'
Replaced Manifests with ClassTags and removed a few other deprecations
Merge branch 'fixhcoref'

merging deprecation removals
replaced deprecated classTag >:> check with typeTag <:< check
app.nlp.mention: a redesign of the parse-based mention finder
app.nlp.mention: removing redundant filtering in parse based mention finding
Fixed code commenting in users guide intoduction and installation
fixed another comment issue in tutorial introduction
la: fix bug in generic leftMultiply
Merge branch 'master' of github.com:factorie/factorie
app.classify: removing unnecessary expnormalizing from bestLabelIndex
Revert "Further work on NounPhrase extractors, EntityType, Gender, Number."

This reverts commit 1b8290102197dba5cedb6211c0c71d2a4f6cc1ce.
Merge pull request #52 from vineetmundhra/master

Add prior beta, while exporting phis after training lda
Merge pull request #61 from alextp/new-parse-mention

app.nlp.mention: a redesign of the parse-based mention finder
app.nlp.coref: fix broken import caused by the reverting of andrew's old commit
changed parse based mention finding to resolve duplicate mentions with the same boundary by taking the named one. Previously this was nondeterministic. We should always take the named one, since we often filter to just use the named Mentions downstream. This also gives deterministic features for coref.
la: adding specialized override for leftMultiply in layered tensor 2
merge