updated code to allow taxon id input to override bam metadata and supplier name to be used as individual name
changes to allow user to specify particular id_run of study
Merge remote branch 'upstream/master'

Conflicts:
	modules/Warehouse/Sample.pm
merging warehouse sample
fixing compilation errors with Moose
changes for species code and retrieval of md5 if missing from metadata
removing species module code
removed Data::Dumper
updated tests with new vertres code
Merge pull request #21 from jm23/master

Changes for vertres tracking pipeline
Fix merge
fix species
Adding filter to NOT include lanes with npg_qc_status of pending
improvements to taxon_id code to prevent false error reports plus new no pending flag
New simple naive taxon lookup using esearch due to cron problems
create fastqcheck file and md5
Merge pull request #22 from andrewjpage/md5_fastqcheck_spreadsheet

create fastqcheck file and md5
create md5 file on disk when importing from spreadsheet
ignore paired when it changes
Merge pull request #23 from andrewjpage/md5_fastqcheck_spreadsheet

Md5 fastqcheck spreadsheet