Adding HistoManager

I looked a little bit into linking with the ROOT libraries, but in all
honesty it looks complicated and for portability it would be best not to
do that.
Removed the AnalysisMessenger

Removed the analysis messenger.  These commands will be replaced by the
G4 AnalysisManager.
Removed Empty Project

Removed the empty project ParticleEnergyDeposition
Changed histogram numbers

Changed the histogram numbering scheme
Trying to debug a segfault in analysi manager

The code segfaults when saving the 2D histogram
Broken Analysis
Fixed bug - error in not creating histograms

The error was not creating the histrograms, so that explains why I
couldn't save them.
Updated the macros

Updated the macros to use the new analysis
Merge remote-tracking branch 'origin/EnergyDep' into EnergyDep