Merge pull request #53 from nds/farm3

New script to strip sequence off gff files
Updated mapping for python modules

Util and GFFminimal for JBrowse
Merge pull request #54 from carlacummins/farm3

Updated mapping for python modules
Updated mapping.yml
Update mapping for python modules
Merge pull request #55 from carlacummins/farm3

Updated mapping for python modules
Added ropy python module to mapping
Merge pull request #56 from carlacummins/farm3

Added ropy python module to mapping
added pacbio_assemble_smrtanalysis-2.0.1
Merge pull request #58 from martinghunt/farm3

added pacbio_assemble_smrtanalysis-2.0.1
Adding mapping for writedb_entry_set
Merge pull request #60 from carlacummins/farm3

Adding mapping for writedb_entry_set
fasta manipulation scripts
Merge pull request #61 from andrewjpage/farm3

fasta manipulation scripts
add chado_dump_genome
extract regions from multifasta
Merge pull request #63 from andrewjpage/farm3

extract regions from multifasta
plasmid identification
Merge pull request #64 from andrewjpage/farm3

plasmid identification
remove snp sites