MCR and chance updated
Bugfix homer hic read detection
Merge branch 'master' of github.com:clark-lab/ngsane
Bugfix hicup output directory
Enhancement for recovery mode

Process read libraries in its own checkpoint each
Hicup wip
Bugfix hicup folder structure
Bugfix folder
Summary.tar.gz created
default fastq ending adjusted
log file adjustments
enhancement file detection
Bugfix trimmomatic read detection
default resource allocation adjusted
Bugfix character encoding in citation
Merge remote-tracking branch 'clark-lab/master'