Rerun sequest on .dta files with missing .out
Merge branch 'sequest_issues'
DTA handling too complicated.
Improving the DTA handling.
Merge remote-tracking branch 'origin/master'

Conflicts:
	services/sequest/src/main/java/edu/mayo/mprc/sequest/core/SequestSubmit.java
Fixing dta2tar writer.
Flipping condition bug.
Merge branch 'master' into daemon_rewrite
The path to the wrapper script is made absolute, not to depend on CWD.
More docs
Response queue name flipped around (to cluster alphabetically)
Javadoc added
Ignore escape sequences in logs.
Skip multiple consecutive empty lines.
Trim when testing for empty, some log lines are just tabs.
Simplifying SGE config, the working directory is always 'cwd' - where Swift started.
Removing the RMI messaging.
Replaced Before/AfterTest with Befire/AfterClass