Merge branch 'feature/qe_disable_optimization' into feature/qe_develop
Allow QE to be built.
Uncomment creation of QE jar
Merge branch 'feature/qe_develop' of https://github.com/SeqWare/seqware into feature/qe_develop
Merge branch 'feature/qe_disable_optimization' into feature/qe_develop

Conflicts:
	pom.xml
	seqware-distribution/pom.xml
Remove moved docs
Update readme for VM users
Update README.md
Update documentation and remote main from old broken and redundant FeatureImporter
Merge branch 'feature/qe_develop' of https://github.com/SeqWare/seqware into feature/qe_develop
Merge branch 'feature/qe_disable_optimization' into feature/qe_develop
Change documentation to reflect misleading .seqware/settings relating to Oozie rather than QE
Merge branch 'feature/qe_disable_optimization' into feature/qe_develop
Allow config to set hostname; remove SEQWARE_VERSION as a config value (obtained instead from building inside the VM).
Allow for feature set wide annotation
Fix up feature set tagging import from VCF
Merge branch 'feature/qe_develop' of github.com:SeqWare/seqware into feature/qe_develop
Update readme for JSON dumping instructions
working in my test tutorial codebase to explore the API
Experimenting... will rollback when done