JSON serialization added to SequenceSettings and ChannelSpec

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12049 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Fix a few compiler warnings in Java UI code

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12050 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
changes to SequenceSettings/ChannelSpec variable names - clojure

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12051 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Fix compiler errors introduced in previous commit.  Also remove a bunch of warnings.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12052 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
comments updated

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12053 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Deprecated functions removed from the API

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12054 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Fix a number of errors due to change in the api

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12055 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Few more fixes due to changed api

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12056 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
fixed build errors in plugins

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12057 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Revert presumably unintended change in r12057.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12058 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Avoid ever adding the same DataProcessor twice.  This seems to create havos in the data processor chain

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12059 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
ImageFlipper plugin: Remove dataprocessor when hiding the plugin.  Better logic restoring the UI.  This will hopefully help avoid absence of images when using the plugin in conjunction with mulitple cameras

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@12060 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd