added check for lines in synblock that begin with '#' and skip; added better check for valid values in start/stop locations of synblock must contain all numbers

git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@924 aead6680-5d07-0410-860c-d65e5a4cd256
cleaned code -- removed re-declaring my variables in same scope

git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@925 aead6680-5d07-0410-860c-d65e5a4cd256
MAjor updates 


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@926 aead6680-5d07-0410-860c-d65e5a4cd256
Added custom CoGeFeatures track to the config


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@927 aead6680-5d07-0410-860c-d65e5a4cd256
Fixed json


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Use conf file command path


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@929 aead6680-5d07-0410-860c-d65e5a4cd256
Change web service path


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@930 aead6680-5d07-0410-860c-d65e5a4cd256
Merge-in Roey's wsgi stuff


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@931 aead6680-5d07-0410-860c-d65e5a4cd256
Minor fix


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Increase annotation maxFeatureScreenDensity


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@933 aead6680-5d07-0410-860c-d65e5a4cd256
Increase annotation maxFeatureScreenDensity


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@934 aead6680-5d07-0410-860c-d65e5a4cd256
Fix to showAverage


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@935 aead6680-5d07-0410-860c-d65e5a4cd256
Updated config for labels and rendering limitations


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@936 aead6680-5d07-0410-860c-d65e5a4cd256
Rename parameter names


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@937 aead6680-5d07-0410-860c-d65e5a4cd256
Added ExperimentView embedded link


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@938 aead6680-5d07-0410-860c-d65e5a4cd256
Added option to show/hide hover scores to track config


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@939 aead6680-5d07-0410-860c-d65e5a4cd256
Modified MaxHeight to be much higher


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Add notebook info to track list


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@941 aead6680-5d07-0410-860c-d65e5a4cd256
Removed limit on gene feature density


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@942 aead6680-5d07-0410-860c-d65e5a4cd256
Remove experiment annotations from track configs for big speedup


git-svn-id: svn+sshtunnel://coge.iplantcollaborative.org/storage/SVN.d/CoGe@943 aead6680-5d07-0410-860c-d65e5a4cd256