Starting work on the contact map tracker
Added the contact mapping plugin
A patch to output the contacts in the contact maps
A bit of a clean up of the histogram code
Removed an unused output plugin
More work
Fixed a mistaken energy value initialisation
Updated the contact map output format
Trying to simplify the global event lists
Fixed contactmap collection during a replica exchange
Cleaning up the PEL and FEL implementations
Further cleanup of the PEL code
fixed a spelling error
Trying to finish tidying the PEL lists up
Added a patch for issue #15
Added informative XML parsing error reports
Added a line number to the xml error output
Added more debugging statements to dynamods command line
Working on a quaternion class
Added a quaternion class