bamtools wip
fix up gzip writing
update README to paired read syntax
update README about how to get Boost, in response to issue #1.
add part writer
Merge branch 'bamtools' of github.com:beaumontlab/antonie into bamtools
add function to get the name of a fastqread
add a bamwriter that generates something that samtools does not crash on, but also does not really work.
rename ZWriter to the more correct BGZFWriter
add the magic that convinces samtools our bamfiles aren't truncated
part of the last commit
s/exit/return/ so our destructors get called, plus clean up logging message
fix up our generation of (unsorted) BAM files so they are fully acceptable to samtools & Tablet!
Merge branch 'bamtools'