first commit

      new file:   FOAM/bmn-FOAM-val.py
      new file:   blast/bmn-BlastBestHit.py
      new file:   blast/bmn-BlastXMLmerge.py
      new file:   blast/bmn-HSPextraction.py
      new file:   blast/bmn-ParseBlastXml.py
      new file:   blast/bmn-ParseBlastXml_changeId.py
      new file:   blast/bmn-fastaMaskBlastHits.py
      new file:   blast/bmn-mpiBlastHopper.py
      new file:   blast/bmn-paraBlast+.py
      new file:   blast/bmn-paraBlast+Kepler.py
      new file:   blast/bmn-paraBlast.py
      new file:   blast/bmn-paraBlastKepler.py
      new file:   blast/bmn-paraBlastXml.py
      new file:   blast/bmn-paraBlastXml_kepler.py
      new file:   blast/bmn-splitblastXML.pl
      new file:   cdhit/bmn-cdhitClusterSizes.py
      new file:   cdhit/bmn-cdhitRemoveSingleSeq.py
      new file:   esom/bmn-ktable2esom.py
      new file:   fasta/bmn-BiggestSeqsFromFasta.py
      new file:   fasta/bmn-CountEachElement.py
      new file:   fasta/bmn-FastaNFilter.py
      new file:   fasta/bmn-FastaRandDivides.py
      new file:   fasta/bmn-GCfasta.py
      new file:   fasta/bmn-GM2fasta.py
      new file:   fasta/bmn-KOoneCount.py
      new file:   fasta/bmn-MaskFasta.py
      new file:   fasta/bmn-Proteo2fasta.py
      new file:   fasta/bmn-SubsetFasta.py
      new file:   fasta/bmn-SubsetFastaByLen.py
      new file:   fasta/bmn-SubsetQual.py
      new file:   fasta/bmn-cleanFastaHeaders.py
      new file:   fasta/bmn-cleanFastaHeadersSam.py
      new file:   fasta/bmn-cleanGFF2FastaHeaders.py
      new file:   fasta/bmn-countDiNt.py
      new file:   fasta/bmn-countFasta.py
      new file:   fasta/bmn-countFastq.py
      new file:   fasta/bmn-countMotif.py
      new file:   fasta/bmn-countNt.py
      new file:   fasta/bmn-fasta2ktable.py
      new file:   fasta/bmn-fastaChooseContigs.py
      new file:   fasta/bmn-fastaCut400.py
      new file:   fasta/bmn-fastaLenDistrib.py
      new file:   fasta/bmn-fastaLenDistribOverlap.py
      new file:   fasta/bmn-fastaNoRepeatId.py
      new file:   fasta/bmn-fastaSameLenDistrib.py
      new file:   fasta/bmn-grepFasta.py
      new file:   fasta/bmn-manipFastaHeaders.py
      new file:   fasta/bmn-nFirstSequencesFromFasta.py
      new file:   fasta/bmn-renameFastaSeqs.py
      new file:   fasta/bmn-sliceSeqs.py
      new file:   fasta/bmn-sortFastaByLen.py
      new file:   fasta/bmn-splitFasta.py
      new file:   fasta/bmn-subsetFastaByMotif.py
      new file:   fastq/bmn-SFF2fastq.py
      new file:   fastq/bmn-fastq2fasta.py
      new file:   fastq/bmn-fastq2fnaqual.py
      new file:   fastq/bmn-fastqID.py
      new file:   hmm/bmn-HMMerBestHit.py
      new file:   hmm/bmn-HMMfilterTC.py
      new file:   hmm/bmn-HMMuniq.py
      new file:   hmm/bmn-changeACCinHMM.py
      new file:   hmm/bmn-grabHMM.pl
      new file:   hmm/bmn-partitionHMM.py
      new file:   kegg/bmn-HMMER2KOtable.py
      new file:   kegg/bmn-SPs2ECs.py
      new file:   kegg/bmn-SPsDb2ECs.py
      new file:   kegg/bmn-blastECseqs.py
      new file:   kegg/bmn-blasthits2ECs.py
      new file:   kegg/bmn-getCOGfromKO.py
      new file:   kegg/bmn-getCOGfromKOfast.py
      new file:   kegg/bmn-getGenesByKEGGPathway.py
      new file:   kegg/bmn-getGenesByKO.py
      new file:   kegg/bmn-getKeggKOdefinitions.py
      new file:   kegg/bmn-getProtbyKeggGeneID.py
      new file:   kegg/bmn-ko2tab.py
      new file:   libioman/bmn-fastSpeed.py
      new file:   sandbox/bmn-AllScriptsGlossary.txt
      new file:   sandbox/bmn-deepsoilParseLane.py
      new file:   sandbox/bmn-exemple_biopython.py
      new file:   sandbox/bmn-trial
      new file:   tables/bmn-ScreenAddInfo.py
      new file:   tables/bmn-sdiff.py
      new file:   tables/bmn-sumPerElement.py
      new file:   tree/bmn-spe2newick.py