Merge develop into master
travis cannot find setup.py
reduced dataset into utils
No virtualenvs yet, trying with root account directly
Merge
Merge conflicts
Fixing for failed TravisCI build #10
Numpy causing problems again during python setup.py install, installing it first via sudo
Trying to install picard directly from package
GATK and snpEff do not seem to be packaged for ubuntu... yet
Bowtie not found on natty, adding NEBC Galaxy PPA
Packaged snpeff for ubuntu, adding my own Launchpad PPA for Travis-CI testing
Merge
Standard Ubuntu picard-tools package is installed by default under java, instead of picard directory
Create transfer/transferred.db if not present (issue #29)
Merge pull request #1 from guillermo-carrasco/guillermo_carrasco_deliveries

Create transfer/transferred.db if not present (issue #29)
Merge
Merge
Only log debug level if specified in the config
Removing default logging of DEBUG level, started moving more things to logger2 (logbook) rather than logger.