Add unit tests
dbvar_breakpoint_wiggle_room parameter is obsolete
Change hardcoded ID to one not about to be deleted.
rebuilt and added restored model classes
Update the expected results since this depends on live data...
updated ur submodule to bd2d1e1
updated jenkins submodule to 1a21236
updated jenkins submodule to c52f4d7
Skip test depending on live data.
Dispatcher:Pass aligned_reads_sample and control to filters
UnionuniqueSnv: Do not validate output with line counts when the bed files do not exist (because some detectors only make vcf)
FalsePositiveVcf: Now functions with single sample detectors as well.
Merge branch 'readcountdebug' into gb_master
whitespace
Break out lock owner computations to avoid unreliable regular expressions.

If the lock name happened to start with "-" or contain "--" these comparisons
would break, whereas now we craft the string with the known values to test
against and due a strict match.

This would lead to stray symlinks without lock directories, which subsequent
processes treat as a fatal error.
cleanup
added downstream_models and downstream_model_associations to Genome::Model accessors
add new accessors for methods which previously got eland alignment information to use new calculated values from BWA alignments