Backporting AnnotationManager.
Backport GenomeInfo.
Add yaml dependency.
Fix public files url.
Add class GenomeInfo.
Backport genome browser from Chipster3.
Fixing file broker client to fetch public file list.
UrlList client implementation.
Public files server backport and Java version upgrade.
Merge branch 'gb-backport' into data_beta

Conflicts:
	.classpath
	build.xml
	src/main/java/fi/csc/microarray/client/visualisation/methods/ChipsterGBrowserVisualisation.java
	src/main/java/fi/csc/microarray/client/visualisation/methods/gbrowser/gui/GBrowserSettings.java
	src/main/java/fi/csc/microarray/filebroker/FileBrokerClient.java
	src/main/java/fi/csc/microarray/filebroker/FileServer.java
	src/main/java/fi/csc/microarray/filebroker/JMSFileBrokerClient.java
	src/main/java/fi/csc/microarray/filebroker/SimpleFileBrokerClient.java
	src/main/java/fi/csc/microarray/messaging/UrlListMessageListener.java
	src/main/modules/ngs/java/fi/csc/chipster/tools/ngs/LocalNGSPreprocess.java
	src/main/resources/version.number