Added fastq screen testsuite/benchmarking, needs polishing.
Parsing of fastq_screen results finished, needs polishing on auto-install of fastq_screen (local perl)
Just assume bowtie is present, maxv and mfma4 generate invalid ASM insn in non-supported processors
Switch to standard test suite for Travis-CI, leaving long-running jobs for make tests, ditching long_tests git branch
Install bowtie 1 and 2 from scilifelab PPA
Python version as Travis-CI string, not number, seems to break the build otherwise
.info file saving fixed
Correct indentation on .travis.yml
Bowtie2 not found?
Install the nose-timer first...
Correct JSON representation, cleanup
Added FAMeS metagenomics reference datasets, only low complexity for now
Merge branch 'fames', remote branch 'origin'
Silly indentation error
Tested python facs remove, does not identify the short ecoli read in test200.fastq. Succint docstrings for facs.c
More descriptive error, remove() flag correction in docs
simNGS test, subprocess.check_call does not support piping
remove contam bug fixed
@tzcoolman suggestion and finishing piping on simNGS automated test, @guillermo-carrasco #reviewthis
Credit, Galaxy rsync server is back online :D