Added MIP_overview
Merge branch 'develop' of https://github.com/moonso/MIP_api into develop

Update branch with changes from Robin
Added GetOptions list instructions
Added define-param cdv file
Info about how to place if-block
Corrected bugs
Removed tip to require/separate custom subroutine
Added csv table for ProgramPreRequisites
Formatting
Added fidsubmitjob parameter table
Explained some variables
Added MIP_overview.rst, MIP_flags.csv
Added pedigree file, IDN file
Added all files
Chnges to structure and pedigree file info

- Minor changes to intersectCollect
* Changed fork-me link
Merge remote-tracking branch 'upstream/develop' into develop
Merge remote-tracking branch 'henrikstranneheim/develop' into develop

Conflicts:
	docs/annotated_file.rst
+ Extended install instructions
* Improved logo
Merge pull request #19 from robinandeer/develop

Develop