Adjusting NovelIterator to maximal efficiency.
Merge remote-tracking branch 'origin/master' into lean
Removed given/when in favor of elsif.
Also multi-core NovelIterator throws no errors.
Fixed race condition where the iterator number plus system time was not enough to generate unique names. The programmed iterated fast enough to clobber the old name. Added two 6 digit integer random number generations to the file name.
Novel regions are now given as a simple _(start..end) appended to the genome name.
This replaces the long and combersome NovelRegion=| ...
If a subset of a novel region is taken, the _(start..end) is updated to appropriately reflect the new position via $self->_getNewIdStartEnd
Moved user-added strains to the "Selected" column to reduce confusion.
Added FAQ to the website.
Added a final nucmer comparison for novelRegion searches to utilize the new, more efficient query-file pan-genome generation.
Novel regions minimumNovelRegionSize bug fix.
Interface adjustment to avoid "Selected" confusion for own files.
FAQ added.
Merge remote-tracking branch 'origin/lean'