Merge pull request #74 from wltrimbl/master

Added FGS "complete" option to option dictionary
Small edit, fixes the fact that the 900.loadDB.source.stats file only contained the first column.  All other columns were missing.
Merge branch 'master' of github.com:MG-RAST/pipeline
Merge pull request #75 from jaredbischof/master

Fixes 900.loadDB.source.stats file.
add awe wrapper for qiime_uclust
Temporarily disabling analysisDB update in pipeline_redo_simseq and not removing the index files to copy them out manually and update those tables more quickly.
Merge pull request #77 from jaredbischof/master

 Temporarily disabling analysisDB update in pipeline_redo_simseq and not removing the index files to copy them out manually and update the job_md5s tables more quickly.
Merge branch 'master' of https://github.com/MG-RAST/pipeline
update awe_qiime_uclust.pl
Merge pull request #76 from wtangiit/master

add awe wrapper for qiime_uclust
add AWE wrapper awe_bowtie_screen.pl
Merge branch 'master' of https://github.com/MG-RAST/pipeline
add AWE wrapper awe_genecalling.pl
add AWE wrapper awe_cluster_paralle.pl
update awe_genecalling.pl usage
Merge pull request #78 from wtangiit/master

updates in awecmd directory
Update awecmd/awe_superblat.sh
add awe wrapper awe_blat.py
fix in awe_bowtie_screen.pl
Merge pull request #79 from wtangiit/master

add awe wrapper awe_blat.py