pre-sge
old utility
old snpcall

Creates a VCF using all Samples in Project.
Now creates a VCF for EACH Sample (part of the preprocess.sge build)
runs coverage boxplot for a sample.bam
runs coverage for all .bam within project
sets location of ngs tools as ENV variables
pre-sge
unchanged
updated to include snpcalling into preprocess Makefile
updates analysis portal mysqldb
pre-sge
unused for now
unused for now
initial commit for sge