added script to import MSMBuilder Gens.lh5 file
refactored
rewrote option parser part to use optparse module
WQFile: learn to specify remote file name
awe-import-gens: learn to subselect using BuildMSM.py's Mapping.dat
support old+new prody versions
ignore commented lines in weights file
learn to compute the rmsd of the cell indices
learn to define cell regions for coloring
learn main command to start awe-wq
tutorial files