MANTA-17 provide read-only access to aligner scores
MANTA-17 add additional assembly QC criteria
MANTA-17 Add funciton and test to convert align match cigar to seq match cigar
MANTA-17 separate out old match descriptor code for evnetual deprecation
MANTA-17 change aligners to use seq match/mismatch notation
MANTA-17 enhance jump aligner to report simple microhomology length across breakend
MANTA-17 add an alignment utility to extract SV micro-insertion
MANTA-17 finish assembled breakend details: add micro-homology ranges and micro-insertions to vcf output