added templates to distribution; issue #557; moved system executor to compute-core, to make it available where for further developments
Merge pull request #563 from georgebyelas/master

added templates to distribution; issue #557; moved system executor to compute-core, to make it available where for further developments
--run implemented for command-line + test issue 500
Merge pull request #568 from georgebyelas/master

--run implemented for command-line + test; issue 500; also removed erroneously added templates
new exceptions and tests #issue 291
Merge pull request #570 from georgebyelas/master

new exceptions and tests #issue 291
command-line refactoring
Merge branch 'master' of https://github.com/molgenis/molgenis
command-line refactoring
Merge pull request #571 from georgebyelas/master

command-line refactoring
remove molgenis-app-omicsconnect, please use molgenis-app-omx
Merge pull request #574 from dennishendriksen/master

Remove molgenis-app-omicsconnect
added extra parameter to specify backend credentials; make it run from database with pilots; issue #573
Merge pull request #576 from georgebyelas/master

added extra parameter to specify backend credentials; make it run from database with pilots; issue #573
solved issue with auto-generating id; introduced autoid flag; now, jobs are starting to run if --run is present
Merge pull request #578 from georgebyelas/master

solved issue with auto-generating id; issue #567; introduced autoid flag; now, jobs are starting to run if --run is present
fix generation of tasks, which use parameters from command line in the parameters file; issue 580; tests are added
Merge pull request #581 from georgebyelas/master

fix generation of tasks, which use parameters from command line in the parameters file; issue 580; tests are added
one more test for parameters
Merge pull request #584 from georgebyelas/master

one more test for using command-line parameters in parameters without recursion