Fixed some plugin stuff for the documentation

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/develop@1145 c0027639-9190-0b57-01eb-f09a03790dae
fixed memory leaks, updated test suite program with new tests to run for Valgrind tests

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/develop@1153 c0027639-9190-0b57-01eb-f09a03790dae
fixed memory leaks, updated test suite program with new tests to run for Valgrind tests

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/develop@1154 c0027639-9190-0b57-01eb-f09a03790dae
ran Linux tests

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/develop@1155 c0027639-9190-0b57-01eb-f09a03790dae
major cleanup of ModelData, no longer store rates and amounts in the same array, renamed things to consistent convention

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/develop@1156 c0027639-9190-0b57-01eb-f09a03790dae
fix method name

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/develop@1157 c0027639-9190-0b57-01eb-f09a03790dae
ran Linux tests

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/develop@1158 c0027639-9190-0b57-01eb-f09a03790dae
Merge branch 'gdevelop' into HEAD

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/feature-llvm@1159 c0027639-9190-0b57-01eb-f09a03790dae
Merge remote-tracking branch 'origin/gfeature-llvm' into gfeature-llvm

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/feature-llvm@1160 c0027639-9190-0b57-01eb-f09a03790dae