Index all annotation tracks including lifted-over tracks
fix typo in error message
Allow branch length updates
Merge branch 'development' of https://github.com/glennhickey/hal into development
Modularize and move hal2assemblyHub to assemblyHub directory
More refactoring. Also move annotation and alignment tracks into a composite track
fix slight issue with column count
Oops, nevermind, misunderstood the separators
Merge remote branch 'origin/development' into lod