Extended dedispersion plan up to DM of 5000
Merge branch 'V-2' of git://github.com/plazar/pipeline2.0 into V-2
Changed permissions to include write permission for group when copying results in search.py.
Should probably make this configurable in the future.
Added option to use a temp dir with the name $PBS_JOBID. Folder must exist before job starts.
(Folder exists on guillimin)
Added missing file from last commit (option for $PBS_JOBID directory)
Changed how zaplist tarball is downloaded so that it doesn't overwrite old tarball before download is finished
Changed how downloader loop delays are calculated to have more short delays.
Ignore M2Crypto.SSL.SSLError when closing CornellFTP connection after timeout error in JobUploader.py.
Changed imagemagick convert call in PALFA2_presto_search.py since png plots were being cut off.
Changed location of singlepulse and pfd folders on FTP server in config/upload.py.
Modify cal-removal in merged mock data.
Modify pipeline to save cal-removal output file.
Added hardcoded(!) 'special queries' to job.py that prioritize new inner galaxy data. In future make this a config option!
Added option for an alternative submit script to do site-specific set-up before calling search.py
Print total number of rows removed when preprocessing mock data.
Merge branch 'V-2' of /home/plazar5/research/PALFA/pipeline2.0 into V-2
Modified datafile.py so writing cal rows file works when there are 0 rows removed.
Added CalRemovalSummary and NumCalRowsRemoved diagnostics to diagnostics.py. But not yet activated in DIAGNOSTIC_TYPES.
Changed 'PALFA2_presto_search.py' so that single_pulse_search.py is called once per prepsubband pass instead of once per DM.
Fix off-by-one error when removing cal in 'datafile.py'.

When preprocessing mock data.