Consolidated so all portal pages use one include.jsp master file

- Standardized doctype declarations and <html> tags
Upgraded to jQuery 1.9.0 and jQuery UI 1.10.0

- Temporarily included jQuery Migrate plugin (should remove once all instances of deprecated jQuery.browser are removed)
- Upgraded some jQuery plugins for version 1.9 compatibility
- Fixed some display bugs in home page, project libraries, run listings, teacher home
- Style updates
- Minor tooltips update and some other small fixes