Make code comments Doxygen friendly
Use javadoc style comments.
Fix copyright template thinko.
Possible fix to remove warning.
Update Doxyfile, use svg and other tweaks and fix doxygen warnings.
Use // for non-documentation comments, use a separated line for chunk enum comments
Merge pull request #34 from fdelapena/master

Make code comments Doxygen friendly (Fixes #28)