update cleaning
add output of selection
update README
Deleted excel output
removed ev1in module and files
partially modified the history related fiels
modified ANC parameter which may be the problem
modified default complexity score threshold, which may make more sense
Merge branch 'test' into dev
modifed the connectivity score measure
modified the mutation counting not finished
modified mutation counting, left some
fully implemented the stepwise mutations and accumulative mutations
fix a small bug
modified scoring: connectivity measuer
updated
merged from dev still missing the output of kinase/phasphatase info and History module
modified the name of subnets
BIG BUG NB: the prunable flag of msites is not set correctly, Fixed
partially implementing the output of kinases and phosphatase