Delete Doxyfile

File in the root of the repo is no longer used, so deleted it.
Merge branch 'develop' to have the lastest android jni changes
Allow specifying android ndk to use at command line

Documentation indicates that the path to the ndk to
use to build could be specified at the command line
except whenever 2 arguments were specified for 
ndk-compile the help message was displayed.
Merge pull request #13 from datalogics-bhaugen/allow-specifying-ndk-at-command-line

Allow specifying android ndk to use at command line
Fix off by 1 error on CFI generation.  First element is 2 not zero.
Merge pull request #14 from bibliolabs/develop

Fix off by 1 error on CFI generation.  First element is 2 not zero.
Added jni::Pointer and jni::PointerPool classes to allow storing smart pointers on C++ side that have been passed to Java side, preventing early deletion. Storage is tested and working, now release needs testing with some closeBook() function on Java side.
Finished the Pointer and PointerPool and tested the lifecycle of containers and packages.
Merge branch 'feature/txtr-s1-sharedptrs' into develop
Add FilterManager, and associated code, to Readium SDK

This change adds the new FilterManager, a class that manages ContentFilters. It can create a ContentFilter when requested. It will create the appropriate ContentFilter based on the data given to it. The FilterManager class itself is an abstract class that can be subclassed into more sophisticated FilterManagers if needed. However, there is already an implementation in this change, called FilterManagerImpl.
Fixes for IRI and CFI

IRIs can now be created piecemeal.
CFI resolution now correctly converts to/from zero-based spine item
indices.
New FilterManager implementation, all setup to work with byte streams requested from the Package object.
Some bugs in async streams and filter chains remedied, and it now works as intended.
Reinstated a test case.
Fixed a bunch more potential thread-safety issues. Still an occasional error getting EOF propagated through the filter chain, however.
Updated C++11 feature macros for VS2013 RC
Correct macro for testing VS2013 compiler version
XML headers ready.
Utilities building for Windows Store now.
Note that libxml2 looks like a no-go on this platform. It'll work on Windows Desktop, but uses CRT functions like getcwd() which are unavailable to Windows Store apps. Solution being tried now is to resurrect the C++ XML API wrapper I started last year, with a Windows-specific implementation using the Windows.Data.Xml.Dom APIs. See branch feature/msxml for progress on that in the near term.
ReadiumXML sub-project builds nicely now.