Restore behaviour after count<ALL_PIECES> fix

Because pos.count<ALL_PIECES>(Us) was always zero,
rewrite the formula as if this would still be
the case.

bench: 8510004
Re-add "Further increase safe checks bonus"

After 40K games at 60 secs, result is still
not clear, but not a regression against SF 4

After
ELO: 50.11 +-2.1 (95%) LOS: 100.0%
Total: 40000 W: 10547 L: 4817 D: 24636

Before
ELO: 49.51 +-2.1 (95%) LOS: 100.0%
Total: 40000 W: 10483 L: 4821 D: 24696

So re-apply the patch to avoid to
special-case this one.

bench: 7403882
Tweak again chain pawn bonus

This is the first chain bonus version
from Ralph that also passed both

Short TC:
LLR: 2.96 (-2.94,2.94) [-1.50,4.50]
Total: 23460 W: 4727 L: 4556 D: 14177

And long TC:
LLR: 2.95 (-2.94,2.94) [0.00,6.00]
Total: 31858 W: 5497 L: 5240 D: 21121

And performed better against current
committed version, always at 60secs:

LLR: -2.94 (-2.94,2.94) [-3.00,3.00]
Total: 26301 W: 4477 L: 4580 D: 17244

This test was done by Leonid.

bench: 8455956
Merge http://github.com/mcostalba/Stockfish into formula_tweaks