Merge pull request #1 from EcoForecast/master

update branch
Merge pull request #2 from EcoForecast/master

merge dan shellscript updates
Merge pull request #3 from EcoForecast/master

update with fix to get historical data
Merge pull request #4 from EcoForecast/master

pull most recent changes
Merge pull request #5 from EcoForecast/master

update code to most recent
Merge pull request #4 from EcoForecast/master

I'm updating!
Merge pull request #5 from EcoForecast/master

updating my repository
Merge pull request #6 from EcoForecast/master

update
Getting updated version
Added mean max min
Merge pull request #21 from AngelaRigden/master

Working on data model
Merge pull request #7 from EcoForecast/master

pulling angela's changes
Bound process model between 0 and 1 to deal with unstable equilibrium issue. calculate ndvi and ggc average min/max to be used later in data model. This will be pulled out of the loop that calls the JAGS model, where it currently resides. Code was tested for 1 site before commit. Model figures are output to .pdf. ask = dev.interactive was changed to FALSE
same commit as for output.pdf
Merge pull request #22 from jam2767/master

commit
Merge pull request #23 from dgianotti/master

Added top-level Operations script.  Functions need to be defined.
Merge pull request #6 from EcoForecast/master

updating my repository
REDOING state space model. Main script is run.SS.model.R
Merge pull request #24 from AngelaRigden/master

Updating files
Merge pull request #7 from EcoForecast/master

Pull statespace model data from Angela