Change index; include atime; pack time as xstat timespec; use ns in memory.

Update the index format header to 'BUPI\0\0\0\4' (version 4).

Change the index to include atimes, and write all times to bupindex as
xstat timespecs.  This is in preparation for indexing all metadata.
After moving all of the times to the index, there should be far fewer
unique instances of the remaining metadata in many/most cases.

Change the index and index-related code to handle all time
values as integer nanoseconds since the epoch, excepting the packed
format, which (as mentioned above) is now an xstat timespec.

After these changes the index-related in-memory and on-disk time value
handling should match that of the metadata code (i.e. metadata.py,
.bupm, etc.).

Signed-off-by: Rob Browning <rlb@defaultvalue.org>
Reviewed-by: Zoran Zaric <zz@zoranzaric.de>
[rlb@defaultvalue.org: change 10e8 to 10**9 for ns per second.]
Remove tmax; should be unnecessary with high resolution timestamps.

This effectively reverses 7956f4eb2646d6ff9d56e62ef9e09e8d4763bb46.

Signed-off-by: Rob Browning <rlb@defaultvalue.org>
Store metadata in the index, in bupindex.meta; only store unique values.

FIXME: add the relevant information to DESIGN (and any suitable code
comments) before adding this to master.

Update the index format header to 'BUPI\0\0\0\5' (version 5).

Signed-off-by: Rob Browning <rlb@defaultvalue.org>
Move bup index's tick to the correct place; document related risks.

Put bup index's tick *after* update_index(), where it belongs, and
document the risks involved in modifying the filesytem during an index
run, or within too close proximity.

Signed-off-by: Rob Browning <rlb@defaultvalue.org>
Add the filename/fd and invalid value to stat_struc_to_py error messages.

Thanks to Nathan Bird <ecthellion@gmail.com> for the initial report.

Signed-off-by: Rob Browning <rlb@defaultvalue.org>
Add support for "bup index --exclude-rx <pattern> ...".

When --exclude-rx <pattern> is provided to bup index, exclude any path
matching <pattern>, which must be a Python regular expression
(http://docs.python.org/library/re.html).  The pattern will be
compared against the full path, without anchoring, so "x/y" will match
"ox/yard" or "box/yards".  To exclude the contents of /tmp, but not
the directory itself, use "^/tmp/.".

You may check the behavior at runtime by setting BUP_DEBUG=2 in the
environment.

Thanks to Zoran Zaric <zz@zoranzaric.de> for reporting a bug in an
earlier version of this patch.

Signed-off-by: Rob Browning <rlb@defaultvalue.org>
Add support for "bup restore --exclude-rx <pattern> ...".

When --exclude-rx <pattern> is provided to bup restore, don't restore
any path matching <pattern>, which must be a Python regular expression
(http://docs.python.org/library/re.html).  The pattern will be
compared against the full path, without anchoring, so "x/y" will match
"ox/yard" or "box/yards".  To exclude the contents of /tmp, but not
the directory itself, use "^/tmp/.".

You may check the behavior at runtime by setting BUP_DEBUG=2 in the
environment.

Thanks to Zoran Zaric <zz@zoranzaric.de> for reporting a bug in an
earlier version of this patch.

Signed-off-by: Rob Browning <rlb@defaultvalue.org>