Changed RAILS_ROOT constant to Rails.root
Removed template inliner as both incompatible with rails 3 and unused
 Replaced instances of RAILS_ROOT and RAILS_ENV with Rails.root and Rails.env
 Replaced instances of RAILS_ROOT and RAILS_ENV with Rails.root and Rails.env
Removed public/index.html
Deleted unused files - public/index.html generated from rails new and template_inliner unused
Replaced instances of RAILS_ROOT and RAILS_ENV with Rails.root and Rails.env
 Replaced instances of RAILS_ROOT and RAILS_ENV with Rails.root and Rails.env
Ran rails upgrade plugin to update routes to rails 3 format
Added delayed_job_active_record gem for delayed job to correctly operate
Renamed back to BioCatalogue from Catalographer
Changes for how delayed job and exception notifier are configured as well as included some more requires.
new config/application.rb file