Add CLI parser to KBPQueryExecutor.
Merge pull request #42 from jgilme1/newPatternStyle

New pattern style
Fix justification interval and run id.
Merge branch 'master' into formatting
Fix off-by-one error at end of offset intervals.
Merge pull request #43 from rbart/formatting

Fix remaining formatting bugs
 updated pattern files
Merge branch 'master' into newPatternStyle