added unit test for matching allele with undescore using S.pyogenes as example
Merge pull request #26 from CraigPorter/underscore_header

added unit test for matching alleles with underscore eg S.pyogenes
fix tests for S.pyogenes
add emm sequence typing
emm url
put in resource check
check FTP and HTTP
download file before using it
tmp copy files because cant figure out load order
Merge pull request #27 from andrewjpage/emmST

Emm st
make scripts executable
Merge pull request #28 from andrewjpage/emmST

make scripts executable
output alternative values instead of contamination
missing commas in scripts
Merge pull request #29 from andrewjpage/master

When theres contamination allow for the alternative matches to be displayed in the results
output the sequence type instead of gene id
Merge pull request #30 from andrewjpage/master

use st instead of gene id
replace method with new STs
Merge pull request #31 from andrewjpage/master

use new st
filter out the comparison allele name