bugfix
bugfixes for pgv filtering pipelines
committing some stuff before merge to latest version of vr-pipe
Merge branch 'develop' of /nfs/team112_internal/production/repos/vr-pipe into develop
stringent genotyping, now with PCR duplicate filter
Merge branch 'develop' of /nfs/team112_internal/production/repos/vr-pipe into develop
add bam metadata to bamcheck file
vfp stage 4
Merge branch 'develop' of /nfs/team112_internal/production/repos/vr-pipe into develop
I knew I forgot something
Merge branch 'develop' of /nfs/team112_internal/production/repos/vr-pipe into develop
Added qa pipeline steps, related tests and test data
test data file added agin
dispatch_wrapped_cmd methods seem to be globally named - make unique
add all the metadata to the bamcheck file
now lists paths correctly
Merge branch 'develop' of /nfs/team112_internal/production/repos/vr-pipe into develop
adding updated qa piline steps
Merge branch 'develop' of /nfs/team112_internal/production/repos/vr-pipe into develop
updating bam depth again..