remove SiteList-class.r
move
move out from SitePair-class.r
remove SitePair-class.r
move out from SitePairList-class.r
remove SitePairList-class.r
move out XMatrix-class.r
remove XMatrix-class.r
remove util.r
move out XMatrixList-class.r
remove XMatrixList-class.r
update all