Preparing R scripts to be run at the command line or via make, as opposed to interactive execution.
More script preparation for running at command line.
Preparing to run our whole pipeline via make by removing everything the pipeline scripts create. Take a deep breath ….
Adding a makefile.
This commit reflects the state right after running 'make'. Lots of figures, results, etc. reappear.
Adding a the 'clean' target Ben put into his Makefile.