SEQWARE-1773 Preliminary fix allowing --force-run to skip workflow run status based on previous runs
SEQWARE-1778 - WorkflowLauncher should not erase ini-file parameters on launch
Also populate the workflow run param table.

This uses the ini file String (which is less than ideal) going across since the web service has no workflow param endpoints.
Handle null ini files
Stop silly doubling behaviour (hibernate workaround)
Merge branch 'hotfix/0.13.6.12' into develop

Conflicts:
	seqware-pipeline/src/main/java/net/sourceforge/seqware/pipeline/deciders/BasicDecider.java
	seqware-pipeline/src/main/java/net/sourceforge/seqware/pipeline/plugin/WorkflowPlugin.java
	seqware-webservice/src/main/java/net/sourceforge/seqware/webservice/resources/tables/WorkflowRunIDResource.java
Iterate version numbers
Update release notes
Fix hardcoded glassfish version