Change temporary directory to use native tempdir
Change imports from qiime to use qiime_backports

A few of the modules had some issues still importing from qiime
libraries, they are now importing from qiime_backports.
Fix non-passing test (format_mapping_file_to_js)

The test was not passing because the dictionary being returned changed
in the order it was being processed, this is given the overhaul that the
parsing modules went through in the past few commits moving things from
the native qiime libraries to the qiime_backport libraries.