ClinSeq: minor update to documentation
Add sdrf file to idf output

Set the sdrf file name on the idf object

Add additional required IDF row headers
Must cbind before the order changes

cbind assumes that the arrays will be in the same
order, but topTags changes the order.  cbind must
happen first.
Merge branch 'copy' into gb_master
update clinseq.pm to not do filtering(this is now done in the RNAseq pipeline), just do intersection of fusion calls with SVs
Added ability to use flexbar v230 which has different params than earlier versions
copy over fusion files even when there are no SV files
igv reference shouldn't default to b36, should be required param
updated usage and docs for CView
Merge branch 'master' of ssh://git/srv/git/genome