Updated mksainseq.rb to GtUword and Gtword
Integrate init of rsi into bendsegde_new
Removed script to evaluated running time of suffix array constructions.
Added function to read file contents into heap.
Merge pull request #139 from stefan-kurtz/sk

Added function to read file content into RAM without using mmap
add tests for -parts and -memlimit
Merge pull request #140 from Garonenur/genomediff

add tests for -parts and -memlimit
make Lua use mkstemp() instead of tmpnam()
Merge pull request #141 from satta/master

make Lua use mkstemp() instead of tmpnam()
use a shared copy of the D.mel genome in LTRd tests
Merge pull request #142 from satta/ltrd_test_redundancy

use a shared copy of the D.mel genome in LTRd tests
added sized multieoplist

and copy function
changed variable name
fix splint and coding style
Merge pull request #143 from mbruns/multieops

Multieops
Merge pull request #144 from Garonenur/mbruns

fix splint and coding style
copy method returns pointer of copy

src-check
Merge pull request #145 from Garonenur/mbruns

copy method returns pointer of copy
cosmetics
remove executable bit for expat files