added additional params in phasing
Merge pull request #96 from freerkvandijk/master

Implemented new protocols in-house NGS pipeline
coutput liftover is bed,bim,fam
fixed bug in merging imp chunks
fix bug in merge samples
corrected bug with arithmetic ops
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Merge pull request #97 from kantale/master

See comments
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Small updates to improve performance of 3 protocols.