changed README.txt to fit the new specifications
change O2 in O3
Added the -Wall flag to makefile
copyright is now 2012
chmod 644 on matrix files
put back all available statistics
indented and renamed a lot of options -> spread the changes
spread name changes from options + indent
corrected bug during compilation
reviewed wentropy.cpp -> some cleaning
verified wentropy, gap and trident scores
wentropy correction
Merge branch 'develop'