changed and built docs for version 0.2.0rc1
topic_no_email
Merge branch 'master' into develop
Merge branch 'develop' into topic_no_email
topic_no_email
Merge branch 'topic_no_email' into develop
 Doc build
docs/project.rst:
- started to add what should be supported in cummerbund functionality
requirements.txt:
- added rpy2
NEW FILE: src/blacktie/scripts/cummerbund.py:
2013-05-14 0958
2013-05-14 1634: changed stuff in docs.., even though this is the wrong branch to do that in...  I suck :(
setup.py:
- added blacktie-cummerbund console script
topic_cummerbund:
examples/blacktie_config_example.yaml:
- added cummerbund_options
topic_cummerbund:
src/blacktie/scripts/blacktie_pipeline.py:
- added code to test/install/run cummeRbund through CummerbundCall()
topic_cummerbund:
src/blacktie/scripts/cummerbund.py:
- changed --prefix option to --out option
- moved the testing for library('cummeRbund') code to import_cummeRbund_library() function
topic_cummerbund:
src/blacktie/utils/calls.py:
- fixed _flag_out_dir() so that if the outdir has not been created yet it gracefully moves on
- added CummerbundCall class
topic_cummerbund:
src/blacktie/utils/externals.py:
- runExtrenalApp now uses full path (progPath) instead of only progName
Merge branch 'topic_cummerbund' into develop
bumped version number to 0.2.1