Partially implemented profiles. Changed back to Properties API from the Preferences API.
Added Setup window.
Got setup window partially working.
Improved Profile menu and cleaned up JReader constructor.
Fixed bug where it was possible to save a profile with invalid filename.
Fixed issue where menus weren't updating correctly when profiles were added or deleted.
Fixed issue where JavaSourceFileParser didn't find declarations in nested classes.
Made profiles save on quit.
Added Logger.
Fixed bug where config was reset when restarting SetupWindow.
Added log4j jar.
Removed dependancy on JGoodies form. Added resources folder.
Still need JGoodies...
Hopefully fixed issues cause by removing JGoodies from the project.
Fixed more path issues with Windows...
Improved some of the path methods in Utilities.
Refactored Menu bar into its own class.
Deleted some unused classes. Added comments.
Refactored the top panel into its own class.
Refactored bottom panel into its own class.