Add *.kid to VA FOIA patch download instructions

Update instructions in 'Scripts/HowtoDownloadPatches.rst' to allow
*.kid to be downloaded from the VA FOIA site.  Disable in
'.gitattributes' whitespace this file extensions.

Change-Id: I2d5870154545126699d42f0d1e554e3f9ad32de2
Add patches referenced by VA Enterprise VistA Increment 2

Follow the instructions in 'Scripts/HowtoDownloadPatches.rst' to
download patches from the VA FOIA site.  Use the following shell code to
produce the URL list and pipe it to wget:

 {
   echo "https://downloads.va.gov/files/FOIA/Software/Patches%20by%20Year%20and%20Month%20Released/2013/April%202013/RMIM-1_SEQ-6_PAT-6.TXT"
   echo "https://downloads.va.gov/files/FOIA/Software/VISTA_FOIA_Historical_Files/VISTA_FOIA_RELEASES_BEFORE_2008/GMRY-Gen%20Med%20Rec%20-%20IO/GMRY-4_SEQ-5_PAT-6.txt"
   echo "https://downloads.va.gov/files/FOIA/Software/VISTA_FOIA_Historical_Files/VISTA_FOIA_RELEASES_BEFORE_2008/GMRY-Gen%20Med%20Rec%20-%20IO/GMRY-4_SEQ-5_PAT-6.kid"
   echo "https://downloads.va.gov/files/FOIA/Software/Patches_By_Application/HBH-HOSPITAL%20BASED%20HOME%20CARE/HBH-1_SEQ-21_PAT-24.KID"
   echo "https://downloads.va.gov/files/FOIA/Software/Patches_By_Application/HBH-HOSPITAL%20BASED%20HOME%20CARE/HBH-1_SEQ-21_PAT-24.TXT"
   echo "https://downloads.va.gov/files/FOIA/Software/VISTA_FOIA_Historical_Files/VISTA_FOIA_RELEASES_BEFORE_2008/DGJ-Incomplete%20Record%20Tracking/DGJ-1_SEQ-3_PAT-3.kid"
   echo "https://downloads.va.gov/files/FOIA/Software/VISTA_FOIA_Historical_Files/VISTA_FOIA_RELEASES_BEFORE_2008/DGJ-Incomplete%20Record%20Tracking/DGJ-1_SEQ-3_PAT-3.txt"
   echo "https://downloads.va.gov/files/FOIA/Software/Patches_By_Application/MC-MEDICINE/mc-2p3_seq-39_pat-42.kid"
   echo "https://downloads.va.gov/files/FOIA/Software/Patches_By_Application/MC-MEDICINE/mc-2p3_seq-39_pat-42.txt"
   echo "https://downloads.va.gov/files/FOIA/Software/VISTA_FOIA_Historical_Files/VISTA_FOIA_RELEASES_BEFORE_2008/QAQ-Quality%20Assurance%20Integration/QAQ-1p7_SEQ-7_PAT-7.txt"
   echo "https://downloads.va.gov/files/FOIA/Software/VISTA_FOIA_Historical_Files/VISTA_FOIA_RELEASES_BEFORE_2008/QAQ-Quality%20Assurance%20Integration/QAQ-1p7_SEQ-7_PAT-7.kid"
 }

Change-Id: If0e38adf5da7aa1c0d154866be8de762909b2536
Move patches from FOIA/ to populate Packages/

Follow the instructions in 'Scripts/HowtoPopulatePackages.rst' to move
VA patches out of 'FOIA/' and organize them in the 'Packages/' directory
structure.

Change-Id: Iad15a9e2e513a08cc297eaa003b4d8249bbe50f5
VA Enterprise VistA: Document increment 2 patches and routines

Report VA Enterprise VistA patch level and routine checksums.

Change-Id: I2645fa0dd28d3a82e5e5e7cbab15a622b4d36488
Utility: Update XINDEXExceptionGen.py for new layout

Change the output of the XINDEXExceptionGen.py file to fit with the new
repository:

  Update written file name from 'package.routine' to 'system.routine'
    ie "Dental.DENTPKG  -> "{Cache|GTM}.DENTPKG"

  Update the output dir to not be a supplied path but to place them into
  the correct "Packages/[package]/XINDEXException/" directory.  It should
  also make this folder if it doesn't exist.

  Replace the "outputdir" argument with a "VistADir" argument to the
  VistA.git source tree.  Add an "MType" argument (-s) which takes the
  value '1' to generate Cache exceptions and 2 to generate for  GT.M.

  Add a new argument that will tell the generator to create the exception
  list for both "F -" and "W -" reports or just the "F -" reports.

Fix some spacing and spelling issues.

OSEHRA-Id: http://issues.osehra.org/browse/OAT-72
Change-Id: I8da96443c7ad20c9b03564c2d7a2bed481eff99f
Merge "Utility: Update XINDEXExceptionGen.py for new layout"
Bug: Fix incorrect exception path being checked

The Package name is being passed to the ReportXINDEXResult functions have
underscores instead of spaces. If the underscores are not replaced, the
exceptions for the file will not be found. As is, the exception file for
the first error encountered will not be found due to the incorrect package
name.

Change the location of the replace command
to not just be after an exception was not found.  Instead place it just
before the foreach that searches the output.

OSEHRA-Id: http://issues.osehra.org/browse/OAT-73
Change-Id: Idb22f4a507edee3ebc84bd4aea0e483cbb83ad7c
Merge "VA Enterprise VistA: Document increment 2 patches and routines"
Merge "Bug: Fix incorrect exception path being checked"