work on the plugins. Have a C and C++ 'demo'
In between fixes
Working on plugin framework. Mainly on how to exchange data trough the callback
Changed 'userdata' to ClientData
Moved plugin callback declarations to plugin base class
Use of  'theHost' in workers
Added xml output from a plugin
Merge branch 'plugin_changes' into adding_plugin_documentation
Removing obsolete conversion from roadrunner internal data to c structure
Ran the tests
Adding plugin documentation
Adding pdf as part of the plugin
Added ability to embed plugin documentation as pdf
Added ability to retrieve the pdf from a plugin
Added getting plugin capabilities as xml
Added ability to set parameters by pointers
Many changes to parameters
Started to phase out the use of __stdcall in the C api, need more work on visual studio side
Added function export to get the number of bytes in a plugins pdf manual
Added skeleton docs for the lmfit plugin
remove log from ConservationExtension -- undefined init sequence with multiple static initializers.
persist conserved moiety attributes to file
update comments
amount rates are only for independent species
Changes to rrPython
Strive to return handles instead of made up Python types
Use CDLL instead of WinDLL

Added docs for the noise plugin
determine if species are conserved moieties
remove un-needed warning