updated with examples, and temp script to download build deps
added picard to deps, updated example to use sorted bam
switch test code to use SamLocusIterator
iterator subclass working
subclass working (really)
removed vim swap file
add vim swp to gitignore
initial attempt to re-open SamLocusIterator instead of copying it
initial reflection working
initial reflection working
reflection working, but override of method does not work when called from base class
removed old reflection test code
Misc update.
add .classpath and .project, and other example/test files
copy SAMLocsuIterator and SAMRecord from git-svn-id: svn://svn.code.sf.net/p/picard/code/trunk@1429 8bce386e-0d6e-43e0-b1ca-608082c0432d
chmod +x download-deps.sh
removed unneeded copy of SAMRecord from samtools java tree
override SAMLocusIterator methods