fixed logging in genbank.py
parse input species and alignment species

and return lists of species objects keyed by 'clean' names
progressive name matching

we keep lists of unmatched names around, and slowly reduce them...
included an example file

with examples of each matching case, for testing
species object improved
tnrs checking is improved

now works with one or many species, and chunks species to submit to
tnrs.

This would help if I ever wanted to check a lot of species at once
new initiation script
matches.py holds all functions for matching
gitignore file
update ignore