update to bring parsing the pindel output files into the eval script
allow printing of bed files, other tweaks
got deletion call extract working in hdfs - possibly minor differences with prev implementation?
got deletion call extract working in hdfs - possibly minor differences with prev implementation?
update deletion splitting rule
set the number of reducers automatically based on number of chromosomes
change to use hadoop to extract deletion calls
revert to old version of peak splitter
make script run hadoop for insertions
insertion calls in hadoop
remove obsolete parameters from eval scripts and variant extractors
discard calls smaller than 40bp instead of 30; strip calls where start > end
remove debug line
update full script to extract in hadoop
logging to try to figure out possible bug?
logging to help debug