Remove packages option from setup.py.
Rename and update README file.
Update setup script.
Double quotes to single quotes.
Update requirements file.
Add license file.
Update the sequence alignment example.
Update the profile alignment example.
Update the sequence alignment example.
Reformat code for PEP-8 and convert double quotes to single quotes.
Merge branch 'develop'

Conflicts:
	README.md
Create MANIFEST.in file.