moved debug message for "processing read N"
Improved debug logging

Re-added checking for mates in buffer, and resetting bin to REMAP when not all mates are present
Made binnie quiet by default (-v to report on processing)

Changed default buffer size to 100000 and default max bases to 1000

Fixed mate count incrementing (was only being set properly for first
read in buffer - should not be set on new reads as well, though this
has only been tested for pairs)

Fixed buffer entry equality function to always check against read group
as well as qname (even when --ignore_rg is set). --ignore_rg now
applies only to checking sort order of original and bridge.
Merge pull request #2 from wtsi-hgi/hotfix/v0.3.4

Hotfix/v0.3.4