fixed issue with mixing ordered contrasts between multiple files
externalized reactome URL and smaller test files for E-GEOD-3779
now ordered constrasts are unique to each ObjectInputStream created
added new experiment
zipped download of expression profiles almost working
Merge remote-tracking branch 'origin/master'
change links to relative
finilized story about new ranking algorithms for differential experiments AND solved bug of 0 not being a valid expression value for differential expressions
extended specific comparison to handle the case of equal fold change, in that case comparison will be based on average pValue
zipped download of expression profiles working and file names in archive fixed
fixed type of experiments and extended annotation loading to have a ready made setup for testing
changed order on mirna bioentity page
some tests for E-GEOD-3779 and modified test data
added some ToDos and loosen some JMeter Solr test assertions to make it more resilient to change of index
Removed uploadAllAnnotations, added a shell script to load all annotations: atlas/web/src/test/resources/load-annotations.sh
Merge remote-tracking branch 'origin/master'
changes for new Solr index
Merge remote-tracking branch 'origin/master'
Merge branch 'master' of github.com:gxa/atlas into expDesignRefactoring
Some refactoring, some failed test being corrected and others being dropped because superfluous.