Change . to % in test_eep_fe.inp variable names.
Add option to use Benhar Spectral Functions for A(e,e'p) instead of IPSM.
    Set use_benhar_sf to 1 to choose to use Benhar Spectral Functions
    Need to define a proton transparency when doing this.  (For IPSM
    the transparency is taken from the IPSM theory file.)
Makefile improvements.
	 1.  Autogenerate dependencies on include files
	 2.  Autogenerate simulate_init.inc and structures_init.inc
Add a README for GitHub.