run_daily.php prevent metal/fuel from being added to system 1

Mining in system 1 is not possible, so metal/fuel should not be added there.
added organ_bonus to ports table
remove s.location != 1 clause from Metal Mining

There is no metal in system 1, so no need to check.
Merge branch 'master' into patch-1

Conflicts:
	docs/sql/new_game.sql