Moved implicit logging dependency additions and deprecated per-deployment logging system property

## [WFLY-2599](https://issues.jboss.org/browse/WFLY-2599)
Removed the implicit logging dependencies from the server and create a new DUP in the logging subsystem. This allows the logging subsystem to be excluded in a ```jboss-deployment-structure.xml``` to skip adding of logging dependencies as well as executing logging DUP's.

Alternatively an attribute was added to the root subsystem to enable/disable the adding of logging dependencies.

## [WFLY-2700](https://issues.jboss.org/browse/WFLY-2600)
Deprecates the ```org.jboss.as.logging.per-deployment``` system property and adds an attribute to enable/disable the processing of logging configurations during deployment.