First commit of the source code for EMAKER.
Remove case that forces a file to be specified only once since WQ only
transfers a file with the same name once to a worker.
Create functions for transferring each set of input files required by MAKER.
Move specification of input files outside the loop since the loop doesn't
affect the input files in any manner.
Create a function that handles the changes to path for remote execution.
Remove use of variable t1 for calculating time difference.
Cosmetic changes on variable names,indentation, and comments.
First attempt at removing unused external libraries.
Cosmetic changes on vertical spacing, loop constraints, variable names.
1. Fix bug: tier file for each gene sequence wasn't specified individually.
2. Cosmetic changes on vertical spacing, comments.
Clear up the specification of the task tag and the tracking of the task
counter.
Add a To-Do file to keep track of things left to do.
Clean up the code in handling the case where there is a single sequence per
task.
Cosmetic changes cleaning up print statements and comments.
Add action item.
Collect stats variables directly using work_queue_get_stats().
Use the work_queue object instead of work_queuec.
Remove unused timestamps.
Cosmetic changes on vertical spacing and indentation.
Remove dead code, cut vertical spaces, and fix indentation.