Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
- This removes some duplicate code..
- This introduces a way to run imputationtool from the E-M-P
-
Merge pull request #40 from harmjanwestra/master

Removal of duplicate and unused classes
- fix missing classes
Merge pull request #41 from harmjanwestra/master

- fix missing classes
Added trityper to genotype reader auto loader
Methods for trityper reader te completly ignore excluded individuals. Can save a lot of memory if used in combination with a qc filter. This way only SNPs with maf >5% in included individuals will be read.
Bug fix in sample filter
Merge pull request #42 from PatrickDeelen/master

Genotypedata reader fixes and improvements
Merge branch 'master' of github.com:molgenis/systemsgenetics
Merge branch 'master' of github.com:DannyArends/systemsgenetics