use_panels fix for login.mako.
use_panels fix for login.mako in toolshed.
Refactor logic for setting metadata exteranlly used local job runner out into a method on the BaseJobRunner class. This improves the readibility and allows other job runners to use this logic.
Rework LWR to use this new method. Overtime the lwr.py and local.py version of that code had diverged and it had never been noticed because I guess no one had been using the LWR with set_metadata_exteranlly = True, which is no longer an option.
More fixes for installing many repositories from the tool shed.
Fix for manage_data_manager.mako.
Add annotation when importing workflow.
Have datatypes.checkers.check_binary call util.is_binary. Fixes unicode file upload under certain conditions.
Have datatypes.checkers.check_binary call util.is_binary. Fixes unicode file upload under certain conditions.
Use util.unicodify when generating dataset peeks.
Use util.unicodify when generating dataset peeks.
Trackster: LinePainter improvements to use block_color when drawing coverage plots and refactor min/max finding to us underscore functions.
Expand the installation errors dict.
Allow tool shed repository dependency definition tags to not include a toolshed attribute.  If missing, the toolshed value will default to the current tool shed.  The following example shows what was required before this changeset:

<repository toolshed="http://localhost:9009/" name="molecule_datatypes" owner="test" changeset_revision="1a070566e9c6" />

Now the following is also valid:

<repository name="molecule_datatypes" owner="test" changeset_revision="1a070566e9c6" />
Display the information in the installation errors dict on repository manage page under the tool test results folder.
Merged.
Display the Reset all metadata on repository option in the Resporitory Actions popup menu in more pages in the tool shed than the Manage repsitory page.
Add interval-to-bigwig converter, which creates a bigwig of coverage data for an interval dataset.
Trackster: use deferred rather than flags to manage tile drawing.
Automated merge.
Fix for detecting job error in data manager tools; needed as a result of recent job flow changes.