Making compatible (XSL from Web and xml_toolbox from Markup) xml_packages_maker standalone and embedded (Markup and XML Converter) versions.

FIXED: generation of XML of ahead and supplement
Renaming automatas to automata_samples
Markup insert mismatching tags sub, sup, bold, italic, and xml_packages_maker fix them.
markup pmc
replace generate_xml_packages.py by make_xml_packages.py
http://trac.scielo.org/trac/PC-Programs/ticket/214
http://trac.scielo.org/trac/PC-Programs/ticket/215
http://trac.scielo.org/trac/PC-Programs/ticket/152
http://trac.scielo.org/trac/PC-Programs/ticket/157
http://trac.scielo.org/trac/PC-Programs/ticket/206
http://trac.scielo.org/trac/PC-Programs/ticket/207

dtd - parser
td contains PCDATA and ifloat
fngrp*

xml_converter
http://trac.scielo.org/trac/PC-Programs/ticket/205
ticket http://trac.scielo.org/trac/PC-Programs/ticket/69
ticket http://trac.scielo.org/trac/PC-Programs/ticket/185
tickets
http://trac.scielo.org/trac/PC-Programs/ticket/170
http://trac.scielo.org/trac/PC-Programs/ticket/185
http://trac.scielo.org/trac/PC-Programs/ticket/69
http://trac.scielo.org/trac/PC-Programs/ticket/176
tickets related to funding:
http://trac.scielo.org/trac/PC-Programs/ticket/176
http://trac.scielo.org/trac/PC-Programs/ticket/211
http://trac.scielo.org/trac/PC-Programs/ticket/17
http://trac.scielo.org/trac/PC-Programs/ticket/89
http://trac.scielo.org/trac/PC-Programs/ticket/124
http://trac.scielo.org/trac/PC-Programs/ticket/189
http://trac.scielo.org/trac/PC-Programs/ticket/103
http://trac.scielo.org/trac/PC-Programs/ticket/232
tickets
http://trac.scielo.org/trac/PC-Programs/ticket/212
http://trac.scielo.org/trac/PC-Programs/ticket/163
http://trac.scielo.org/trac/PC-Programs/ticket/166
http://trac.scielo.org/trac/PC-Programs/ticket/161
ticket http://trac.scielo.org/trac/PC-Programs/ticket/233
ticket http://trac.scielo.org/trac/PC-Programs/ticket/213

Converter
article.2db - removing exceding lines (not necessary keep both standard,back,text and standard,back,article)
XML Converter

- rbpv v22n1 - there was one article which was not loaded. The reason was its article.id conflicted with the id of other article. FIXED. Solution was use DOI as article.id.
Markup PMC
http://trac.scielo.org/trac/PC-Programs/ticket/235

XML Converter
http://trac.scielo.org/trac/PC-Programs/ticket/237
http://trac.scielo.org/trac/PC-Programs/ticket/238
Ajustes na sub-article[@article-type='translation']
Consider publication dates which @pub-type='epub-ppub'
 xml_scielo - conversion to PubMed - ignore gizmo if the source of the data is from XML
1. xml_scielo (generation of XML to PubMed and ISI): Problems with special characters in database isis, came from XML files
2. markup pmc
   tickets: #240, #241, #242 (http://trac.scielo.org/trac/PC-Programs/ticket/242)
1. Markup - bug - as editing xref then clicking on OK, there was a message.
2.1 Markup PMC - bug - rid/rid author/aff sometimes does not match
2.2 Markup PMC - bug - sometimes Word generate sgm.xml with bold, italic, sup, sub misplaced. So, it was create a function to fix .sgm.xml file.
3. XML SciELO (exporting to PubMed) - bugs
3.1 missing space in article title because part of text was in italic
3.2 PubDate (only one)
3.3 Affiliation separators
4. XML Converter - gerapadrao for each collection