count_matrix_spec.rb still had 'circos' where it should say 'ribbon'
Modified calculate so that it fetches taxa for slices of gi. Will cause GOLDWGS to be fetched multiple times
fixed view_menu name and installed composite_primary_keys
Working on cleaning up calculate test cases.
Fixed mistake in autotest.sh.
Working small test case for calculate.
Added ranks to hmm_profile factories.
Cosmetic changes to other files.
Slight improvement of calculate logging
Not in alpha anymore, RNRdb 1 down
More logging from calculate
Adding http_kvm_guests.xml needed for forwarding in twin computers
Removed unnecessary log for missing kingdom information
More logging from calculate: before bulk import of taxa
Even more logging from calculate (possibly found the 'nil' problem).
Increasing SLICE_SIZE to 50000 temporarily
Fixed two more log statements where the message ended up on the wrong row.
Correcting misleading log message
Updating deploy.rb to ruby-2.0.0-p247
Problems with Ruby versions, trying an upgrade to 2.0.0-p353
Final log message of calculate was in rescue clause!
Setting HTTP_TIMEOUT to 100 minutes, and SLICE_SIZE back to 5000
Backtrace from failure log message in calculate
More logging...