Trmmed trailing whitespace on multiple files
Bumpped copyright year to 2013
Added per-directory reverse sorting
Added icon for markdown (.md) files
Code formatting tweaks
Added simple method for including analytics tracking code in the page header
Updated theme jQuery call to v1.9.1 and modified URL to be protocol-agnostic
Removed unessecary use of @
Added getFileHash method for file hashing
Added some protection against hashing files outside of the listed folder tree
Refactored some code to work more logically
Added ability to view file checksums via modal pop-up
Dropped "Hashes" from checksum modal
Renaming some elements/classes for consistancy
Tweaked getFileHash() function to return php array.
Fixed styles still using old id name
Trimming extra whitespace
Fixed typo
Mostly documentation updates... also changed some functions access.
Bumped version to 2.1.0