Wrote framework for haplotype filter
Merge branch 'master' of github.com:jts/sga
Testing more filtering options
First pass at segregation-based filtering
Fix build by defining a destructor for IOverlapExtractor
Wrote simulators to test haplotype filter
Haploid/diploid segregation filters now working and verified by simulation
Starting to implement non-uniform depth seg filter
More testing of seg filter
Seg filter now working on real data
Set k on the command line
Cleanup seg filter and add --haploid option
Github issue 38: unclear error message for scaffold2fasta