SEQWARE-1773 Preliminary fix allowing --force-run to skip workflow run status based on previous runs
SEQWARE-1778 - WorkflowLauncher should not erase ini-file parameters on launch
Also populate the workflow run param table.

This uses the ini file String (which is less than ideal) going across since the web service has no workflow param endpoints.
Handle null ini files
Stop silly doubling behaviour (hibernate workaround)
Documentation update
Plugin auto-gen update
Remove confusing un-used decider
Try to make version numbers substitute correctly in docs
SEQWARE-1784 - Allow FileLinker to not require lane
Merge pull request #156 from SeqWare/feature/decider_tutorial_fixes

Feature/decider tutorial fixes
Ensure that migration plugin does not die on incomplete workflow run report data
Merge branch 'develop' of github.com:SeqWare/seqware into develop
Merge branch 'hotfix/0.13.6.12' into develop

Conflicts:
	seqware-pipeline/src/main/java/net/sourceforge/seqware/pipeline/deciders/BasicDecider.java
	seqware-pipeline/src/main/java/net/sourceforge/seqware/pipeline/plugin/WorkflowPlugin.java
	seqware-webservice/src/main/java/net/sourceforge/seqware/webservice/resources/tables/WorkflowRunIDResource.java
Iterate version numbers
Update release notes
Fix hardcoded glassfish version
Merge branch 'develop' into feature/admin-ws-silentlake-support