Merge pull request #95 from wasade/death-march

Death march
Merge pull request #96 from wasade/death-march

Death march
Additional input handlers
input handlers handle None
fixed bug in creation of our BelovedFunctionality
Merge pull request #101 from jrrideout/death-march

Additional input handlers
Merge pull request #102 from gregcaporaso/death-march

fixed bug in creation of our BelovedFunctionality
Merge pull request #98 from wasade/death-march

tests for cli and clmain
fixes to make web code run again, looks a little prettier.
removing path from qiime-server
removing path from qiime-server
removed ResultName
Merge pull request #103 from douginator2000/death-march

Just fixing a few things preventing the web interface from running.
reorganized directory structure; fixes #105
updated all import statements to use new directory structure
moved test files to correspond to new directory structure
updated import statements
updated to reflect new directory structure
fixed failing tests
updated to reflect new directory structure