Add basic functionality to ratatosk_submit_job.py.
Add tests for getting samples
Rewrite and update ratatosk.ext.scilife.sample functions
Move make_fastq_links to ratatosk.utils
Update align seqcap execution order
Update ratatosk_submit_job.py
Add config
Update ratatosk_submit_job.pl - now working
Update ratatosk_submit_job to use central planner at biologin
Add bcbio helper module for projects that lack SampleSheet.csv files
Fix argument bug and only submit one devel job
Save SampleSheet.csv generated by ratatosk.ext.scilife.bcbio as it is needed by the pipeline
Sort sample names before submitting jobs
Make localhost default scheduler
Make ratatosk_submit_job use localhost as default scheduler
Add support for target suffixes
Move opt_to_dict to ratatosk.utils
Update mock file structure, move full tests to full subdirectory
Update basic run script and config
Add vcf collecting function