initial switch to pure setup.py building
khmer is a Python project, adopt a standard Python layout. Now that Python 2.7 is a pre-requisite remove argparse. Update version to 0.6 in khmer/__init__.py too. Only run zlib & bzip2 configure && make when building the extension (and only if they need updating); don't run on every invocation of setup.py. Added Trove metadata for the project. Added long_description. Bring in support for the nosetest command to setup.py. Initial porting of compilation options from the Makefiles to setup.cfg.
hardcode extra opts for code coverage for now
another update of the version number
link the gcov library; still need to figure out how to only do this upon request and not for all builds
revert aliasing of test to nosetests
whoops! re-add invocation of setup(...)
remove code coverage options from the default  build
update doxygen to use new layout
restore include directive
remove outdated IDEAS
taking all the blame
baby steps to removing this Makefile
synchronizing author lists
document new install regime
updated for latest khmer-protocols
move remaining legacy build options into the lib/Makefile
fix waffle.io badge, list updated Python requirement
document origin of ez_setup.py
use develop setuptools command instead of build