Bio/PDB/NACCESS: Various NACCESS fixes and unit tests

- os.system(cp/rm) calls converted to correspoding shutils calls.
- os.popen3 and mktemp calls are replaced with subprocess and mkstemp.
- pdb file path is converted to absolute path.
- rsa and asa files added to Tests/PDB directory.
- NACCESS unit tests added.
- NACCESS.py pep8-ified.
Thank Gokcen Eraslan in NEWS and CONTRIB (PDB related work)
Slightly clearer exception for debugging.

This is known to fail on (very old) EMBOSS 2.10.0 output, see:
http://www.biostars.org/p/87226/