fixed header levels in background
added comment to background
divided paragraph titles to sections
added placeholders for missing content
Merge branch 'master' into intro
annotated one result from peptidb
Merge branch 'intro'
Merge branch 'ora-comments'
added methods and results to index, cleaned up methods
split peptidb2.rst into methods and results
dumped whatever I had in peptimap into results
removed peptimap and peptidb2 documents from index
Merge branch 'peptidb'
added raw chronicles of SVM chapter to notes
added dana's methods text for the SVM chapter
added some more detail into the SVM effort
added todo support in conf file
changed all todos to notes, to avoid the hassle
completed some sentences about the shift from residues to densities
added ftmap CS figure to notes