[WFLY-1583] Remove org.jboss.as.logging dependency from the org.jboss.logmanager module

Remove ```org.jboss.as.logging``` dependency from the ```org.jboss.logmanager``` module. Use the default configurator in the logmanager rather than one defined in the logging subsystem.

Also a commit to disable a test that seems to have temporary failures. A [JIRA](https://issues.jboss.org/browse/WFLY-1584) has been filed to fix, but the test should be disabled until it is fixed.

Lastly lock the ```logging.properties``` file during writes.