Fix the component retrieval methods in Index16ColorModel

Byte-swapping the values is not correct, and getRed(int), getGreen(int),
and getBlue(int) should normalize the return values to 0-255, as per the
Javadoc for ColorModel:

http://docs.oracle.com/javase/1.5.0/docs/api/java/awt/image/ColorModel.html#getRed(int)
Merge pull request #456 from melissalinkert/rebased/dev_4_4/index16-color-model

Fix the component retrieval methods in Index16ColorModel (rebased onto dev_4_4)
adding partner projects to menu
Merge pull request #458 from hflynn/FLIMfit_menu

Adding partner projects to menu
ZeissLSMReader: Correct ROI indexing and metadata store call ordering

- Call SetROIID before any other SetShape call
- Decrement i and numberOfShapes in the PALETTE case as for default,
  to prevent an index out of bounds exception when next calling
  SetROIID
- Set X and Y properties of label ROIs
Allow DeltavisionReader truncated files, expose plane offset method
Remove code duplication, add documentation
Add state assertions
Modify bfGetReader allowing to pass fakes for unit testing
Add unit test for bfGetReader() functions

Test pixelsType, dimensions sizes, endianness, interleaved and series count
Refactor bfGetPlane() unit tests
Merge pull request #462 from knabar/deltavision-interface-dev_4_4

Add features to Deltavision interface
Merge pull request #460 from rleigh-dundee/lsm-roi-10515

ZeissLSMReader: Correct ROI indexing and metadata store call ordering
Merge pull request #464 from sbesson/bfgetreader

bfGetReader() unit tests
Display reader name in the console during metadata pages auto-generation
Fix anchor formatting in metadata-summary page
Regenerate metadata pages
Merge pull request #469 from sbesson/schema_anchors

Fix broken anchors in Sphinx metadata pages