Add batch job submission script

Very messy right now and specific to job submission on Minerva.
Fix a couple of bugs
Add job submission status output
Move old stuff into old-results folder
Move code into fresco directory
Start fixing broken imports
Rename fresco.py and submit_fresco_jobs.py

Necessary to get imports to work...
Fix remaining broken imports
Fix fresco name in submit-fresco-jobs
Merge pull request #21 from rybern/refactoring

Fixed bug which mispaired test results with test masks
Merge branch 'master' into issue-14

Conflicts:
	fresco/command_line_wrapper.py
Merge pull request #22 from jrrideout/issue-14

Added batch processing script and reorganized repo.
Updated defaults to those suggested by @rybern

Also reorganized ordering of some options
Fix indentation
Add study 550 to batch processing
Added more useful filtering functionality

Filtering will now accomodate our immediate use-cases for fresco (can still definitely be expanded upon though). Fixed bug in filtering that was already present before my modifications.

Fixes #24 #25 #26.
Merge pull request #27 from jrrideout/real-data-prep

Filtering, bug fixes, and a few misc. changes
Changed when n_generate is applied from inside the optimization function to when the generator is being initialized
Merge branch 'master' into refactoring

Conflicts:
	fresco/command_line_wrapper.py
Rewrote 'stitching' test outcome function