Removed SWFUpload from source

Reason:
* not needed by Icinga Web
* pre-compiled binary data

fixes #4806
Added uncompressed source for Raphael and GRaphael

also changed the filenames to the upstream naming and added a note for EVE
in RaphaelJS.

refs #3474
Fixed db schema updates for 1.10, use transaction and set version at the end

refs #2529